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Table 3 Membrane and secreted proteins concentrated from 37 °C Yersinia supernatant by CN3080 Nanotraps.  All listed proteins were undetected by MS without CN3080s

From: Use of magnetic nanotrap particles in capturing Yersinia pestis virulence factors, nucleic acids and bacteria

Entry

Gene names

(primary)

Gene ontology (biological process)

Gene ontology (cellular component)

Gene ontology (molecular function)

P17778

yopM

–

Cell outer membrane; extracellular region

Metal ion binding

Q0WG31

gptB

Phosphoenol-pyruvate-dependent sugar phosphor-transferase system

Cytoplasm; integral component of membrane

d-glucosamine PTS permease activity; protein-N(PI)-phosphohistidine-sugar phosphotransferase activity

Q7CGH2

hasF

 

Efflux pump complex; outer membrane

Efflux transmembrane transporter activity; porin activity

P0C7U7

lcrV*

Pathogenesis

Extracellular region

–

Q8ZC05

Gpt

GMP salvage; IMP salvage; XMP salvage

Cytosol; plasma membrane

Hypoxanthine phosphoribosyltrans-ferase activity; magnesium ion binding; xanthine phosphoribosyltrans-ferase activity

P26948

caf1*

 

Capsule; extracellular region

 

Q8ZG77

ompA

Ion transport

Cell outer membrane; pore complex

porin activity

Q8ZH58

bamA

Gram-negative-bacterium-type cell outer membrane assembly; protein insertion into membrane

Bam protein complex; integral component of membrane

–

Q8ZBN2

eno

Glycolytic process

Cell surface; extracellular region; phosphopyruvate hydratase complex

Magnesium ion binding; phosphopyruvate hydratase activity

P31493

yopE

Negative regulation of phagocytosis; pathogenesis

Cell outer membrane

GTPase activator activity

  1. * Proteins were chosen for computational modeling with dye, along with PsaA