Antibodies and reagents
An anti-Aβ (6E10) antibody was purchased from Invitrogen (Carlsbad, CA, USA). Anti-Iba1 (019-19,741) was acquired from Wako laboratory chemicals (Osaka, Japan). Pierce streptavidin-coupled Poly-Horseradish Peroxidase (HRP) and protein markers were ordered from Thermo Fisher Scientific (Ann Arbor, MI, US). Thioflavin S (ThioS), dimethyl sulfoxide (DMSO), and bovine serum albumin (BSA) were obtained from Sigma-Aldrich (Shanghai, China). Casein tryptone, yeast extract, and agar were ordered from Sinopharm (Shanghai, China). Bifidobacterium selective (BS) culture medium and trypticase-phytone-yeast (TPY) Broth were ordered from Hopebio (Qingdao, China). Cy3-N-hydroxysuccinimide (NHS) ester was purchased from Lumiprobe (Hannover, Germany). The 4′,6-diamidino-2-phenylindole (DAPI) solution was ordered from Beyotime Biotechnology (Shanghai, China), tetrahydrofuran (THF), N-cetyltrimethylammonium bromide (CTAB, 99%) and methanol were purchased from Aladdin (Shanghai, China). Tetraethyl orthosilicate (TEOS, 98%) and paraformaldehyde (PFA) were obtained from Macklin (Shanghai, China). FITC-d-Lys was obtained from Shengguang Biotechnology Co., Ltd. (Xiamen, China). All additional chemicals were purchased from commercial suppliers and used as received.
Animals
4 month-old transgenic APPSwe/PS1dE9 (APP/PS1) mice were purchased from the Beijing Huafukang Biotechnology Co., Ltd (Beijing, China). Age-matched C57BL/6J mice were purchased from Shulaibao Biotech Co. (Wuhan, China). This study used APP/PS1 and wild-type C57BL/6J mice aged approximately 4–8 months. All mice were maintained under standard specific pathogen-free (SPF) conditions with an ambient temperature of 23 ± 2 °C, air humidity of 40–70%, and an artificial 12 h light/dark cycle. All experiments were approved by the Institutional Animal Care and Use Committee of Huazhong University of Science and Technology.
Synthesis of MSNs
MSNs were prepared using the coprecipitation method [32]. Briefly, 40 mL of methanol was mixed with 110 mL of ultrapure water, and the pH was adjusted to 11 with ammonia. CTAB was added and heated. When the temperature reached 80 °C, a certain amount of TEOS was added dropwise and stirred vigorously for 3 h. After cooling to room temperature, the solution was centrifuged at 9500 rpm for 10 min, washed 3 times with deionized water, and then vacuum dried overnight to obtain a white solid powder. Finally, the dry white powder was dissolved in a mixed solution of 100 mL of absolute ethanol and 10 mL of concentrated hydrochloric acid. The solution was refluxed for 24 h to remove CTAB. The mass ratio of TEOS/CTAB was controlled at 2:1 to synthesize MSNs. Next, MSNs were mixed with Poly-L-Lysine in a shaker (55 rpm) at 37 °C for 30 min and then vacuum dried to obtain a discolored powder.
MSNs characterization
Here, 20 μL of 1 mg/mL MSNs was dropped on a copper grid, and excess liquid was removed using filter papers. After drying at room temperature, the morphology of the nanomaterials was observed by transmission electron microscopy (TEM) on a HITACHI HT7700 transmission electron microscope (TEM; Hitachi High-Tech, Japan) at a voltage of 120 kV. Next, dynamic light scattering (DLS; photon correlation spectroscopy) and the Zetasizer Nano-ZS90 system (Malvern Instruments, Worcestershire, UK) were used to measure the size distribution and surface potential of MSNs.
Fluorescence modification of MSNs
MSNs (10 mg) were dissolved in 1 mL of PBS solution. 5 μL of Cy3-NHS (100 μg) in DMSO solution was slowly added to the MSN suspension, stirred overnight in the dark, followed by centrifugation (5000 rpm, 10 min) to remove unloaded Cy3 from the outer surface of the MSNs.
FITC-d-Lys staining of Bifidobacterium in vitro
Bifidobacterium was purchased from the Culture Collection Center of Yunnan Institute of Microbiology. Bifidobacterium was grown in the BS culture medium at 37 °C until OD600 reached 0.6. The medium was diluted to an OD600 of 0.3 with fresh medium containing FITC-d-Lys (0.1 mM). The diluted bacteria were further incubated at 37 °C until the OD600 was 1.0–1.5. The bacteria were centrifuged and washed 3 times with the BS culture medium.
Preparation and characterization of MSNs-Bi
The cultured FITC-labeled Bifidobacterium was centrifuged at 8000 ×g for 10 min at 4 °C, then the pellet was washed and resuspended in 5 mL of physiological saline. Then, 1 mL of 40 µg/mL Cy3-MSNs was mixed with 1 mL of FITC labeled-Bifidobacterium culture (2.31 ×1011 CFU/mL) for 30 min incubation at 37 °C in a shaker (255 rpm). After washing 3 times with PBS, FITC labeled-Bifidobacterium and MSNs-Bi were suspended with 2.5% glutaraldehyde solution at 4 °C for 10 h, and then dehydrated in increasing series of water–ethanol solutions (35%, 50%, 70%, 85%, 95%, and 100%), and finally vacuum dried. The morphology of MSNs-Bi and Bifidobacterium was examined by scanning electron microscope (SEM; Sirion 200, the Netherlands).
In vitro stability of MSNs-Bi
To evaluate the stability of MSNs-Bi, on the one hand, the change of fluorescence intensity of Cy3-MSNs-Bi with time was detected. Briefly, 20 μg Cy3-MSNs-Bi were incubated in 200 μL Krebs–Henseleit solution (D-glucose 2.0 g/L, magnesium sulfate 0.141 g/L, potassium phosphate monobasic 0.16 g/L, potassium chloride 0.35 g/L, sodium chloride 6.9 g/L, calcium chloride dihydrate 0.373 g/L, and sodium bicarbonate 2.1 g/L) at 37 °C for 0, 0.5, 1, 2, 3, 4, 6, 9, and 12 h. The Cy3 fluorescence signals of samples were detected using a multiscan FC microplate photometer (Thermos, USA) at an emission wavelength of 490 nm (excitation at 440 nm). The release curve of Cy3 in MSNs is shown in Additional file 1: Fig. S10, and the Cy3 fluorescence intensity of MSNs-Bi will superimpose the free release amount of Cy3 from MSNs.
On the other hand, the activity of Bifidobacterium at different time points was detected. 1 μL of MSNs-Bi at different time points was mixed with 100 μL of culture medium, and their activity was evaluated by counting the number of colonies formed by Bifidobacterium on the culture medium.
Effects of MSNs on bacterial proliferation
Antimicrobial kinetics were evaluated using a co-culture assay [15]. Briefly different concentrations (5, 10, 40, 60, 80, 100, and 160 μg/mL) of MSNs were added to 10 mL of Escherichia coli (E. coli) and Bifidobacterium cultures (1 ×105 CFU/mL). Subsequently, the E. coli and Bifidobacterium cultures with MSNs were shaken at 37 °C for 12 h. At each time interval, 100 μL of the medium was transferred to a 96-well plate, and the optical density at 600 nm was measured with a NanoDrop 2000 (Thermo Scientific, USA) and the minimal inhibitory concentration was calculated.
To determine the minimum bactericidal concentration (MBC) of MSNs, 100 μL of E. coli and Bifidobacterium cultures (1 ×105 CFU/mL) were inoculated on Luria Broth (LB) agar or BS culture medium pretreated with different concentrations of MSNs (5, 10, 40, 60, 80, 100, and 160 μg/mL) overnight at 37 °C. After 24 h, colonies were observed and digital images of each plate were captured to evaluate the effect of MSNs.
Bacterial activity test of MSNs-E. coli and MSN-Bi in gastrointestinal stimulated fluid
To determine the release characteristics of E. coli and Bifidobacterium loaded with MSNs under physiological conditions of the gastrointestinal tract, simulated gastric fluid (SGF) and simulated intestinal fluid (SIF) were prepared according to the method specified in United States Pharmacopoeia. Briefly, SGF was prepared by dissolving 2 g/L NaCl and 3.2 g pepsin (350 activity units per mg) to make a final volume of 1 L ddH2O with a pH of 2.0. The SIF at pH 7.2 was prepared using 0.05 mol/L KH2PO4 and 1.2% (w/v) bile salts. Then, 100 μL of MSN, MSNs-E. coli, and MSNs-Bi (1 × 105 CFU/mL) were cultured in 1 mL of SGF and SIF at 37 °C for 5, 30, 60, and 120 min. The number of colonies formed by E. coli and Bifidobacterium on LB agar and BS culture medium was used to evaluate the effect of MSNs on Bifidobacterium viability.
Fluorescence imaging and biodistribution studies of MSNs-Bi
To evaluate the biodistribution of MSNs-Bi, 4 month-old male C57BL/6J mice (n = 3) were intranasally injected with MSNs-Bi (1 ×109 CFU/mL). An equal volume of PBS was used as a control. Major organs (e.g. abdomen, brain, lung, spinal cord, intestine, and intestinal contents) were collected, washed with PBS, and imaged using a homemade whole-body imaging system at 5 h post-injection. In addition, tissues of the brain, abdomen, spine, and intestine were fixed in 4% (w/v) PFA overnight and sliced in 50 μm sections using a CM1950 Leica cryostat (Leica Biosystems, Germany). Fluorescence signals of Cy3-MSNs and FITC-labeled Bifidobacterium in tissues were observed by confocal imaging.
In vivo tracking of Bifidobacterium
To evaluate the superiority of nasally administered MSNs-Bi over conventional oral administration of Bifidobacterium, 4 month-old male C57BL/6J mice (n = 3) were intranasally injected with Cy3-MSNs-Bi (1 ×109 CFU/mL; Bifidobacteria were labeled with FITC). An equal amount of FITC-labeled Bifidobacterium was administered orally as a control. Then, fresh intestinal contents (stomach, small intestine, and large intestine) were collected and imaged using a homemade whole-body imaging system at 0, 0.25, 0.5, 3, 6, and 9 h post-injection [33, 34].
Assessing the effect of MSNs-Bi on intestinal inflammation
To evaluate whether intranasal instillation of MSNs-Bi was more effective in alleviating intestinal inflammation in APP/PS1 mice than gavage with Bifidobacterium, 4 month-old APP/PS1 mice were treated with PBS, MSNs, MSNs-Bi, and Bifidobacterium, respectively. The Bifidobacterium were dissolved in PBS before treatment and administered at a dose of 1 ×109 CFU/kg every 4 days for a total of 7 times. After treatment, mice were allowed to rest for 2 months. Then, the mice were sacrificed. Treatment effects were evaluated according to neuroinflammation, brain and intestinal Aβ plaques, intestinal flora, and behavioral status.
Histopathological analysis
After treatment with PBS, MSNs, Bifidobacterium, and MSNs-Bi, colons were collected from mice and then fixed in 4% (w/v) PFA solution overnight. Colon tissues were embedded in paraffin sections and stained with hematoxylin and eosin (H&E). H&E stained sections were imaged on a Nikon Ni-E microscope (Nikon, Minato, Tokyo, Japan). Colonic crypt length in mice treated with PBS, MSNs, Bifidobacterium, and MSNs-Bi was evaluated using ImageJ software.
16 s DNA library preparation and metagenomic analysis
After collecting feces from APP/PS1 and C57BL/6 mice treated with MSNs, MSNs-Bi, and Bifidobacterium, the total DNA of fecal samples was extracted using a high-throughput DNA isolation kit (Boao Classic, Beijing). To prepare the 16 s rDNA library, primers (forward: CCTAYGGGRBGCASCAG; reverse: GGACTACNNGGGTATCTAAT) were utilized to amplify the V3–V4 region of the 16 s rRNA. According to the manufacturer’s protocol, sequencing was performed on the Illumina HiSeq 2500 platform. Furthermore, quality control was carried out using QIIME pipelines. Raw reads were filtered and trimmed using default settings. Subsequently, the pair-end reads were combined and the primers were removed. Next, the taxonomy was assigned by search with a similarity threshold of 97%. Downstream analysis was performed using the R packages ‘MicrobiotaProcess’ and ‘ggplot2’. Alpha diversity is measured based on four different metrics, including Chao1, Abundance-based Coverage Estimator (ACE), Shannon, and Simpson. The differential abundance of the microbiome was calculated using LEfSe of the R package ‘lefser’.
Immunoprecipitation and western blotting
After treatment with PBS, MSNs, Bifidobacterium, and MSNs-Bi, APP/PS1 mice were anesthetized with 0.4 mL Avertin (25 mg/mL) and perfused transcardially with 1 M PBS for 30 min; the tissues (brain, stomach, duodenum, jejunum, ileum, caecum, and colon) were stored at − 80 °C before analysis. Frozen tissues were homogenized in liquid nitrogen and dissolved in tris-buffered saline solution (TBS, 20 mmol/L Tris and 137 mmol/L NaCl, pH 7.6) as previously described [1, 35]. Briefly, the homogenized supernatant was centrifuged (10,000 g, 30 min) at 4 °C to obtain TBS-soluble proteins. The supernatant was aliquoted and stored at –80 °C before analysis. Additionally, 100 μLof brain homogenate supernatant or blood was incubated with 40 μg/mL of 6E10-conjugated protein A/G magnetic beads for 30 min at room temperature. Magnetic beads were washed 5 times with PBS on a magnetic stand. Then, 20 μL of PBS and 4 μL of loading buffer (Boster Biotech, USA) were added and the mixture was boiled at 95 °C for 10 min. Finally, beads were loaded and subjected to 12% tris-tricine sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE). Proteins separated by SDS-PAGE were transferred onto polyvinylidene fluoride (PVDF) membranes, which were blocked with PBS-T containing 5% skimmed milk for 30 min. Subsequently, membranes were incubated with primary antibody 6E10 (1:1000, 5% skimmed milk) overnight at 4 °C and washed with PBS-T. Next, the membranes were incubated with a second antibody HRP-conjugated goat anti-mouse IgG (H +L) (1:4000, PBS-T) for 1 h. Finally, immunoreactive proteins were identified using ECL substrates (Vazyme, China) on a Tanon 5200 Multi (Shanghai, China).
Immunofluorescence analysis of tissue sections
Brain, stomach, duodenum, jejunum, ileum, caecum, and colon tissues were collected from APP/PS1 mice treated with intranasal instillation of PBS, MSNs, MSNs-Bi, and Bifidobacterium. Next, the tissues were pipetted into 4% (w/v) PFA overnight and then dehydrated in 30% (w/v) sucrose solution. Tissues were then cut into 25 μm sections using a cryo-Leica CM3050S microtome and mounted on adhesion microscope slides (Jiangsu, China). Sections were blocked with 3% BSA for 2 h, treated with 0.2% Triton X-100 (Macklin, China) for 30 min at room temperature, and incubated overnight at 4 °C with the anti-Aβ primary antibody 6E10 (1:1000). Subsequently, sections were incubated with Cy3-conjugated goat anti-mouse IgG (H +L). Finally, all tissue sections were counterstained with 0.002% ThioS solution for 30 min and washed 3 times for 5 min each in 50% ethanol (v/v). Confocal images were acquired on a Zeiss LSM710 at 10 ×magnification and analyzed by Image J software.
Quantitative analysis of Aβ and inflammatory factors
For quantitative analysis of Aβ and inflammatory factors, frozen tissues of APP/PS1 mice treated with PBS, MSNs, MSNs-Bi, and Bifidobacterium were homogenized in liquid nitrogen and extracted using TBS solution. The homogenized supernatant was then centrifuged at 10,000 g for 30 min at 4 °C to obtain TBS-soluble proteins. Following this, Aβ levels in the mouse brain and intestine were quantified using the Aβ42 human ELISA kit (Catalog #KHB3441, Invitrogen). The BD Cytometric Bead Array (CBA) Mouse Th1/Th2/Th17 Cytokine kit (Catalog #560485, BD Biosciences) was used to quantify the levels of inflammatory factors in the blood.
Determination of SCFAs
Feces from different groups of APP/PS1 mice treated with PBS, MSNs, MSNs-Bi, and Bifidobacterium were collected and stored at − 80 °C before analysis. Total SCFAs were extracted from 50 mg stool samples using the Mouse Short-Chain Fatty Acid ELISA Kit (Catalog #RJ17989, Renjie Biosciences). Data are expressed as mean content (pg/g) ± SD.
Behavioral analysis
Odor cross-habituation test
To assess the olfactory function of mice after different treatments, an odor cross-habituation test was performed using a previously described method to detect olfactory defects in mice [36]. Monomolecular odorants including heptanone, isoamyl acetate, ( +) enantiomer of limonene, and ethyl valerate (Sigma Aldrich, China) were diluted to 1 ×10−3 mol/L in mineral oil and coated on a cotton ball. The cotton ball was then wrapped in an odorless plastic bag with small holes and placed in the bottle cap to prevent the odor liquid from reaching the cage or animals, but allow the volatile odor fumes to diffuse. Odor cross-habituation was tested in four 20 s trials by placing a cotton ball on the side of the animal's cage with a 30 s interval between them. During sniffing, the time recording was terminated when the mouse's nose was within 1 cm of the odor of the cotton ball.
Nest construction assay
Nesting behavior is a simple and versatile behavior test that has been widely used to assess motor deficits. Consistently sized paper towels (5 cm ×5 cm) were placed in the same position in the mouse cages in the PBS, MSNs, Bifidobacterium, and MSNs-Bi treatment groups. After 24 h, the position of the paper towels within the nest was observed.
Step down test
During the training phase, mice were initially placed individually in a shock chamber to freely examine the environment for 3–5 min. Then, mice received unconditioned stimulation (0.4 mA). The time the mice jumped to the safety station when it first received an electric shock was considered to be its perception ability. Next, mice were placed in a shock chamber for 30 s to measure immediate response, and the process was repeated 4 times. After 24 h, each mouse was returned to the same safety station in the shock chamber, and the total time and number of shocks within 5 min were recorded.
Statistical analysis
Statistical analyses were performed using GraphPad Prism version 8.0 for Windows. Data are presented as mean ± standard error of the mean (SEM). One-way or two-way analysis of variance (ANOVA) was used for multiple group comparisons. Statistical significance is indicated in the graph with *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001, and n.s. (means no significance).